BtaALTD0018142-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94010161-94011436:-
Coord C1 exon
chr11:94011310-94011436
Coord A exon
chr11:94011291-94011309
Coord C2 exon
chr11:94010161-94010529
Length
19 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTCATTTATTTTCTCCCAGGGA
3' ss Score
9.19
Exon sequences
Seq C1 exon
ATCCTGGACATACAGCTTGGTATCAGTTCTCAAAATGATCAGTTGCTGAATGGAACAGCAGTAGAGAATGGGCATCCAGTCCAGCAGCACCAAGAGGAGCCTCTGGAGCAGAAGAGACAGAGTTTAG
Seq A exon
GTGAAGACCGTGTGATTCT
Seq C2 exon
GGAAGAGCAAAAAACAATTCTGCCGGTAACTTCTTGCTTTAGCCAGCCACTCCCAGTGTCCATCAGCAATGCGAGTGGCCTACCCATCACCACATCTGTCAGTGTTGGCAACCTCATTCTGAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAATCCGTTGCAAATGGGAAGATGGTTAATAGCTGAAAGGAGGTTCATCTTTCAAATTTGTGACCATACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATATTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTTAAGCCCTCTTGCATTAGCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867-23-33,24-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTGGAGCAGAAGAGA
R:
CTCGCATTGCTGATGGACACT
Band lengths:
106-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development