MmuALTD0011689-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37370069-37376790:-
Coord C1 exon
chr2:37376661-37376790
Coord A exon
chr2:37376642-37376660
Coord C2 exon
chr2:37370069-37375428
Length
19 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCACTGTCATTTTCTCTCAGGGA
3' ss Score
9.62
Exon sequences
Seq C1 exon
GAAATTTTGGACATACAACTTGGTATCAGTTCTCAAAATGACCAGTTGCTCAATGGAACAGCAGTGGAAAATGGTCATCCAGCCCAGCAGCACCAGAAGGACCCAGGAAAGCCGAAGAGACAGAGTTTAG
Seq A exon
GTGAAGACCATGTGATTCT
Seq C2 exon
GGAGGAGCAAAAACCAATTCTGCCGGTAACATCTTGCTTTAGCCAGCCACGTCCAATGTCTATTAGCAGTGCAAGCTGCCTCCCCATCACCACATCTGTCAGTGTTGGCAACCTCATTCTGAAAACTCACGTTATGTCTGAAGATAAAAACGACTTTTTAAAACCTATTGCAAATGGGAAGATGGTTAACAGCTGAAAGGAGGCTCAGCTTTCAAATCTGTGACCACACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATATTTTTTTTAAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTCAAGCCCTCTTGCATTAGCATTATGAAAAAAAAGAAAATTTACTTTACTAGGGTAATGTTCACTTTCCAGAAATTATTGGAATTTGGACAACATTTAACTTAAGCTTCAAGCAGCTTTTTATGAGTTTGTAGCAATCCGGTGCAGTAACTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-41-48,42-48-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.446
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGAAGGACCCAGGAAAG
R:
ATAGACATTGGACGTGGCTGG
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types