RnoALTD0025308-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21626852-21628654:-
Coord C1 exon
chr3:21628525-21628654
Coord A exon
chr3:21628506-21628524
Coord C2 exon
chr3:21626852-21627222
Length
19 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCACTATCATTTTCTCTCAGGGA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GAAATTCTGGACATACAACTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAACTGCAGTGGAAAATGGTCATCCTGTCCAGCAGCACCAAAAGGACCCCGTAAAGCAGAAGAGACAGAGTTTAG
Seq A exon
GTGAAGACCATGTGATTCT
Seq C2 exon
GGAGGAGCAAAAACCAATTCTGCCAGTAACATCTTGCTTTAGCCAGCCACGCCCAGTGTCTATTAGCAGTGCAAGCTGCCTCCCTATCACCACATCTGTCAGTGTTGGCAACCTCATTCTGAAAACTCACGTTATGTCTGAAGAGAAAAACGACTTTTTAAAACCTATTGCAAATGGGAAGATGGTTAACAGCTGAAAGGAGGCTCATCTTTCAAATCTGTGACCACATCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATATTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTCAAGCCCTCTTGCATTAGCATTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-28-33,29-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAAAAGGACCCCGTAAA
R:
CACTGCTAATAGACACTGGGCG
Band lengths:
112-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]