HsaALTD1002607-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr9:122844556-122851229:-
Coord C1 exon
chr9:122851100-122851229
Coord A exon
chr9:122851081-122851099
Coord C2 exon
chr9:122844556-122849822
Length
19 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTCATTTCTTTTTTCTCAGGGA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GAGATCTTGGACATACAGCTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAATGGCAGTGGAAAATGGGCATCCAGTACAGCAGCACCAAAAGGAGCCACCAAAGCAGAAGAAACAGAGTTTAG
Seq A exon
GTGAAGACCATGTGATTCT
Seq C2 exon
GGAGGAGCAAAAAACAATTCTGCCGGTAACTTCTTGCTTTAGCCAGCCACTCCCAGTGTCTATTAGCAATGCAAGTTGCCTCCCCATCACCACATCTGTCAGTGCTGGCAACCTCATTCTGAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAACCTGTTGCAAATGGGAAGATGGTTAACAGCTGAAAGGAGGTTCATCTTTCAAATTTGTGACCACACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATATTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTTCAAGCCCTCTTGCATTAGCATTATGAAAAAAAAAAAGAAAATTTACTTTACTAGGGTAACATGTTCACTTTCCAGAAATGATTGGAATTTGGACAACATTTAACTTAAGCTTCAAGCAGCTTTTTATGAGTTTGTAGCAATCCGGTGCAGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586-46-60,47-60-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=NA C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTACAGCAGCACCAA
R:
GAGTGGCTGGCTAAAGCAAGA
Band lengths:
107-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains