BtaALTD0018458-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51066845-51067464:-
Coord C1 exon
chr22:51067364-51067464
Coord A exon
chr22:51067360-51067363
Coord C2 exon
chr22:51066845-51066990
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCCA
5' ss Score
-0.81
3' ss Seq
GTCCTTCCCCTGTTCCCTAGTCG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CACCGCAGCTGTGAGCCTGATGACCCCACGGCGGCCCCTGAGTGCCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGCAGAGCAGAGGACCCGTGAGGACA
Seq A exon
GTAG
Seq C2 exon
TCGAGGGTAGCCAGTGGAATGAGGGCCTGCTGGTGGGGCGGCCCCCCGAGGAACCTGAGCATCCCCTCACCGAGAACTCCCTGCTGGAAGTCCTAGATGGTGTCGTCATGATGTATAACCTCAGTGTTCACCAGCAGTTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588-24-35,25-35-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCCTCGGAGAAAGTGA
R:
AGCAGGCCCTCATTCCACT
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development