RnoALTD0025790-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116840586-116841403:-
Coord C1 exon
chr8:116841205-116841403
Coord A exon
chr8:116841201-116841204
Coord C2 exon
chr8:116840586-116840731
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCTG
5' ss Score
1.08
3' ss Seq
TTCAGTGTTCTGCTCCCCAGTTG
3' ss Score
7.02
Exon sequences
Seq C1 exon
CGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCCCTGCCCCGGCCTGGCTGGCTAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAGCAGCCGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTCCCTGAATGTGGAACAGAGGACCCGTGAGGACA
Seq A exon
GTAG
Seq C2 exon
TTGAGGGCAGCCACTGGAATGAGGGTCTGCTGTTGGGGAGGCCCCCTGAAGAGCCTGAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTGGATGGCACAGTCATGATGTACAGTCTGAGCGTTCACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-46-45,47-45-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGAGGACCCGTGAG
R:
ACAGCGAGTTTTCCGTAAGCG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]