MmuALTD0011931-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:107965202-107966012:-
Coord C1 exon
chr9:107965814-107966012
Coord A exon
chr9:107965810-107965813
Coord C2 exon
chr9:107965202-107965347
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCTG
5' ss Score
1.08
3' ss Seq
TGCCGTGTTGTGCTCCCCAGTTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
CGTCCGATGCAAGCCCTGGCCATCGGAGGGGCACTGCCCCTGCCCCGGCCAGGCTGGCTCAGTTCTCCAACCCTGGGCAGAGCCAACCGCTTCCTCAGCACGGCAGCTGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTCAAAGTTCGCTCACTGAATGTGGAACAGAGGACCCGTGAGGACA
Seq A exon
GTAG
Seq C2 exon
TTGAGGGCAGCCACTGGAATGAGGGCCTGCTGTTGGGGAGGCCCCCTGAAGAGCCTGAGCAGCCGCTTACCGAGAACTCGCTGTTGGAAGTCCTGGATGGCACAGTCATGATGTATAACCTCAGCGTTCACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-34-36,35-36-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.482
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGGAACAGAGGACCCG
R:
GAGTTCTCGGTAAGCGGCTG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: