HsaALTD0005435-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49705082-49705679:+
Coord C1 exon
chr3:49705082-49705182
Coord A exon
chr3:49705183-49705186
Coord C2 exon
chr3:49705534-49705679
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCTT
5' ss Score
1.61
3' ss Seq
TTCCCTCCCCAACTCCCCAGTTG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CACAGCGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCCGTGAGGACA
Seq A exon
GTAG
Seq C2 exon
TTGAAGGCAGCCACTGGAATGAGGGCTTGCTGCTGGGGCGGCCCCCCGAGGAGCCTGAGCAGCCCCTCACCGAGAACTCGCTGCTGGAAGTCCTGGATGGGGCGGTCATGATGTACAACCTCAGCGTACACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-35-49,36-49-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCGGAGAAAGTGAAGG
R:
CAGCAAGCCCTCATTCCAGTG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains