BtaALTD0023334-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26410090-26412230:-
Coord C1 exon
chr2:26412030-26412230
Coord A exon
chr2:26412018-26412029
Coord C2 exon
chr2:26410090-26410226
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
TGTTTGTGTTTTTTTTACAGTCA
3' ss Score
9.59
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCAGTGGACAAAGGAGAATTCACATGTCCTCTCTGTAGGCAGTTTGCTAACAGTGTTCTTCCTTGTTATCCTGGAAGCAATGTTGAAAACCACCTTTGGCAGCGTCCTAGTAACAAAAGCATACAAGATCTCATAAAGGAAGTGGAGGAGCTGCAAGGACGTCCGGGAGCTTTCCCA
Seq A exon
GTAAGCATCAGT
Seq C2 exon
TCAGAAACCAACTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATACAGAGATTATAGCAAGACTCCAGGCTCACCAGATAATGATTTTCTCTTTATGTATTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-35-35,36-35-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(33.9=28.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACGTCCGGGAGCTTTC
R:
ATCTCTGTATTTCTTCTGAGTGGT
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development