RnoALTD0032716-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56239997-56242493:+
Coord C1 exon
chr3:56239997-56240197
Coord A exon
chr3:56240198-56240209
Coord C2 exon
chr3:56242357-56242493
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
GTATGTTCACTTTTTTATAGTCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCAGTGGACAAAGGAGAATTCACATGTCCACTCTGCAGACAGTTTGCTAACAGCGTTCTTCCATGTTATCCTGGAAGCAATGTGGAAAATAACCTTTGGCAACGTCCTAGTAACAAAAGCACACAAGATCTCATAAAGGAAGTGGAGGAGCTGCAGGGACGGCCGGGAGCTTTCCCA
Seq A exon
GTAAGCATCAGT
Seq C2 exon
TCAGAAACCAACCTAAGTAAAGAAATGGAGTCTGTAATGAAAGATATAAAAAACACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCGCCAGACAATGACTTTCTCTTTATGTACTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-49-50,50-50-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.283
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(33.9=26.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGCAGGGACGG
R:
TCTGTATTTCTTCTGAGTGGTGT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]