BtaEX0000074 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTH2]
Coordinates
chr5:100115320-100118909:-
Coord C1 exon
chr5:100118810-100118909
Coord A exon
chr5:100118404-100118454
Coord C2 exon
chr5:100115320-100115471
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATCATTTCTTACAGCAC
3' ss Score
9.41
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTTACAGGTTTTCAGACCACTCCATGGAGGTTGATTTCTGGGGTTTTAGGAGTAATATGCCTTTTGTTGATGGTAACTTTGGGAGTTTTGTTGAAAAATT
Seq A exon
CACTTACTATACAAAGTGTTCAGCTTGGACCCTCCACAGACCTCAGTGAAG
Seq C2 exon
AATCTTGCTGCTATTCTTGCCAAGAAAAATGGATTGGCTACCAATGCAACTGTTATTTCATCTCTAATGAAGTAAAAGCATGGGAAGACAGTAGGGATTTTTGTGTTTCTCATAATTCCAGTCTACTTCAGATACAAAACAGAAATGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000966_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(75.7=82.4)
A:
PF083915=Ly49=PD(21.6=44.4)
C2:
PF0005916=Lectin_C=PU(27.3=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGTTGATTTCTGGGG
R:
TAACAGTTGCATTGGTAGCCA
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development