BtaINT0000254 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTH2]
Coordinates
chr5:100118404-100118909:-
Coord C1 exon
chr5:100118810-100118909
Coord A exon
chr5:100118455-100118809
Coord C2 exon
chr5:100118404-100118454
Length
355 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTCTTATCATTTCTTACAGCAC
3' ss Score
9.41
Exon sequences
Seq C1 exon
TTTACAGGTTTTCAGACCACTCCATGGAGGTTGATTTCTGGGGTTTTAGGAGTAATATGCCTTTTGTTGATGGTAACTTTGGGAGTTTTGTTGAAAAATT
Seq A exon
GTAAGTTTTTATAGTCAAGGCTATATAAAAAAAATCAAAATTGTGATGAAGCTATCTTATAAGAAAAGTTTCATTTTGATAACATGTAAACGATTCTGATGCTGGAAAAGACTGAAGGCAAAAGGAGAAGGGGGTGGCAGAGGATGAGACGGTTAGAGAGCATCACTGAATCAGTGGACATGAATTTGAGCAGAGTCCCAGAGAGAGTGGAGGACAGAGGAGCCTGGTGTGCTGTAGTCCATGGGGTCGCAAAGAATCAGACAGGGACAATGTGCTGATTTGGTACTGAACAAAAATATTTTGTTATTTCATAAATGTTTATCTGACAAAGTAAATTTCTTATCATTTCTTACAG
Seq C2 exon
CACTTACTATACAAAGTGTTCAGCTTGGACCCTCCACAGACCTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000966:ENSBTAT00000001280:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(75.7=82.4)
A:
NA
C2:
PF083915=Ly49=PD(21.6=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]