BtaEX0000108 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33640158-33650183:-
Coord C1 exon
chr19:33649629-33650183
Coord A exon
chr19:33643097-33643192
Coord C2 exon
chr19:33640158-33640391
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGACCTTTCCTCTTCTTAGGCT
3' ss Score
10.18
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCTGATGGCTCCAGGCCCGCTGTGCGGGGTCCCTGCTCACCCTCCGGCCGCTCTCAGCCCAGACTCTGGCTCAGCCAGTCCCGCAGAAGAAGAGAACCCAGGCTCCCCGGGGAGCCCTCCAGGGGAAACAGGGGAAACTGGGGGACAGGGCTCTGAGTGGCAGGGAGCTCCCAAGGCAGAGGGCCTGGAGGAGGAGGAGGAGGTCCTGTGTGACTTCTGTCTCGGGGCCAGCAGGGTGAGGGCCGTCAAGTCCTGCCTGACCTGCATGGTGAACTACTGCCCGGAGCACCTGCGGCCGCACCAGGAGAACAGCAGGCTGCACGGCCACCAGCTAACGGAGCCCGCCAGGGACCGGGACCTGCGGGTGTGCCCCGCCCACCGCAGCCCACTGATCGCCTACTGCGACCCCGACGGGCAGTGCATCTGCGAGGAGTGCAGCCAGGCCGAGCACAGGGGCCACGCCTTGGTCTCCCTGGACGCCGCCCGCAGGGCCAAGGAG
Seq A exon
GCTGAGCTTCGGAGAACCCAGTTAGACCTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCAAACCATAAATCTGTCCTG
Seq C2 exon
GTGTCAGTGTCGGAGGTGAAGGCCGGGGTGGAGGAGCAGTTCGGGGAGCTCCGTGCTGCCTTGACGAAGGCCCAGGCCGACGTGATGCTCTTCCTGGAGGAGAAGGAGCAAGCTGCCCTGGGCCAGGCCAATGGCATCAAGACCCACCTGGAGTACAGGAGTGCAGAGATGGAGAAGGCCAGGCAGGAGCTGGACAGGATCGCTGCCATTGGCAGTCCCGTGCTGTTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=22.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCATCTGCGAGGAGTG
R:
CTCCAGGAAGAGCATCACGTC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development