RnoEX0093547 @ rn6
Exon Skipping
Gene
ENSRNOG00000003219 | Trim16
Description
tripartite motif-containing 16 [Source:RGD Symbol;Acc:1309749]
Coordinates
chr10:49231730-49245822:+
Coord C1 exon
chr10:49231730-49232496
Coord A exon
chr10:49240930-49241025
Coord C2 exon
chr10:49245589-49245822
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCCTTCTCCCTTAGGCT
3' ss Score
10.49
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGATGGCTGAATTGGATCTAATTGCCCCAGGGCCTCTGACCGGGGTCACTGTTCACCCTTTGGCTCCTCTCGGCCCAGACCCTGGGTCAGCTATTCCAATAGGAAAAGAAGATGTGGACCTTCTCAGCAAGCCAGGCGAGGAAACCCAGGGGCAGGGTGACCTCGCAAAGCTCGGGGCTCCTGGTGATGAAGAGGAGGGACAGATCCTGTGTGACTTCTGTCTTGGGGCCAGCAGAGTAAGGGCTGTAAAGTCCTGTTTGACCTGCATGGTGAATTACTGTGAGGAGCACCTGCGGCCACACCAGGAGAACAGCAAACTGCACAGCCACCAGCTAACCGAGCCCACAAAAGACCAGGATCTGCGCACCTGCCCTGCCCACCACAGCCCTTTGGTTTCCTTCTGCCACACGCACCAGCAGTGTATCTGCCAGGAATGCGGCACGGGTGAACACAGAGGCGACAGCACTGTCTCCCTGGATGCAGCCCGCAGGAGCAAAGAG
Seq A exon
GCTGACCTTCGGTGCATGCAGCTGGACCTGGAGCAGAAGCTCAAGTTGAACGAAAATGCCATTGCCCGGCTCCAAGCCAACCACAAGTCTGTTTTG
Seq C2 exon
GTGTCCGTGTCAGAGGTGAAGGTGGTGGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCCGTGAGGAAGGCCCAGACTGATGTGATGCTCTTCTTAGAGGAGAAAGAACAGGCTGCACTGAATCAGGTCAACGGCATCAAGACCCACCTGGAGCACAGGAGCATCGAGATGGAGAAAAACAAGCAGGAGCTGGAGAAGTTGGCCTCCATCAGCAACACTGTGCTCTTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003219-'1-5,'1-1,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=0.016 C2=0.026
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=24.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATCTGCCAGGAATGCGG
R:
GAGCATCACATCAGTCTGGGC
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]