DreEX0081145 @ danRer10
Exon Skipping
Gene
ENSDARG00000010673 | trim16
Description
tripartite motif containing 16 [Source:ZFIN;Acc:ZDB-GENE-090512-6]
Coordinates
chr12:46648886-46677821:+
Coord C1 exon
chr12:46648886-46649245
Coord A exon
chr12:46675118-46675213
Coord C2 exon
chr12:46677588-46677821
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGTGTGTCTACAGAAA
3' ss Score
9.53
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GAGTCTAAAGATCCTCAGAAAGATGATGAAGATGATGAGGAGGAGGAGGAGGAGGTTTTGGGGCCAGATGTGGTCACCTGTGACTCCTGCATCGATAAGCCGTGCCGAGCTAAAAAGTCTTGCCTCACCTGTCTGGTGTCGTACTGCGAGTCTCACCTGAGGCCACATCTGGAGAATGCCAAGTTCCAGAGCCACAGGTTGGTGGATCCTCTGCGGGACATTGAGAGGCGGACCTGTGAAGCTCACCGCAGCCCGCTGGAGCTCTACTGCTGCATGTGCTGCCTCTGCCCAGCCTGCGTCACAGAGGAGCACCTCGGACACCAAGCCCTGCCCATAGCCGAGGCGCGCAGGAATATAGAG
Seq A exon
AAAGAGCTTCAGGACAAGCAGACAGAAATGCTGAAGACGATGACGGCCGCAGAAAACGCCATTAACAAGCTGCAGGTCAACACTGTGTCTATAGAG
Seq C2 exon
GGCTCAGTGCAGGAGGTGCGGGCTGTGATGGAGGAGCAGTTCAGTATCCTGCAGGCCGCAGTGGAGCAGGTGAAGCGGGATGTGTGTGAGCTGCTGGAGGCGGAGGAGCGGCAGGCGCTGCGGCAGGCCGATGGCATACGGGTGCATCTGGAGCAGCGCTGCGCTGAACTCAAGAAAACACAGAGCAGAGTCCAGAAGATCAGCAAGAACAAGCACGACATACACTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010673-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=32.2),PF100794=DUF2317=PU(7.3=7.4)
A:
PF100794=DUF2317=FE(25.8=100)
C2:
PF100794=DUF2317=FE(62.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGCGCAGGAATATAGAG
R:
CAGATGCACCCGTATGCCATC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]