MmuEX0048854 @ mm9
Exon Skipping
Gene
ENSMUSG00000047821 | Trim16
Description
tripartite motif-containing 16 [Source:MGI Symbol;Acc:MGI:2137356]
Coordinates
chr11:62633733-62647714:+
Coord C1 exon
chr11:62633733-62634501
Coord A exon
chr11:62642605-62642700
Coord C2 exon
chr11:62647481-62647714
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATCTCCTCCCTTAGGTG
3' ss Score
11.32
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCAGATGGCTGAATTGGATCTGATTGCCCCGGGGCCTCTGACCGGGGTCACTGCTCACCCTTTGGCCCCTCTCGGCCCAGACCCTGTGTCAGCTATCCCAGCAGAAAAAGAAGATGCGGACCCTCTCAGCAAGTCAGGTGAGGAAACCCAGGAGCAGGGTCATGACCCCGCAGAGGTCGGGGCTCCTGGTGAAGAGGATCAGATCTTGTGTGACTTCTGTCTTGGGGCCAGCAGAGTAAGGGCAGTGAAATCCTGTCTGACCTGCATGGTGAACTACTGTGAGGAGCACCTGCGGCCACACCAGGAGAACAGCAAACTGCACAGCCACCAGCTAACCGAACCCGCAAAGGACCAGGATCTACGCACCTGCCCTGCCCACCACAGCCCTTTGGTTTCCTTCTGCCACACGCACCAGCAGTGTATCTGCCAGGAATGCGGGGAGGGTGAACACAGAGGCGACAGTACTGTCTCCCTGGATGCAGCCCGCAGGAACAAAGAG
Seq A exon
GTGGACCTTCGGTGTATGCAGTTGGACCTGGAGCAGAAGCTTAAGTTGAATGAAAATGCCATTGCCAGGCTCCAAGCTAACCATAAGTCTGTTTTG
Seq C2 exon
GTGTCGGTGTCAGAGGTGAAGGTGGTAGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCTGTACGGAAGGCCCAGGCAGATGTGATGGTCTTCCTAGAGGAGAAAGAACAGGCTGCACTGAATCAAGTCAACAGCATCAAAACCCATCTGGAGCACAGGAGCCTCGAGATGGAGAAAAGCAAGCAGGAGCTGGAGAGGCTGGCCGCCATCAGCAACACTGTGCTGTTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047821-'1-7,'1-4,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=24.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGACCAGGATCTACGC
R:
CTTCACCTCTGACACCGACAC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: