MmuEX0048854 @ mm10
Exon Skipping
Gene
ENSMUSG00000047821 | Trim16
Description
tripartite motif-containing 16 [Source:MGI Symbol;Acc:MGI:2137356]
Coordinates
chr11:62820231-62834212:+
Coord C1 exon
chr11:62820231-62820999
Coord A exon
chr11:62829103-62829198
Coord C2 exon
chr11:62833979-62834212
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATCTCCTCCCTTAGGTG
3' ss Score
11.32
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCAGATGGCTGAATTGGATCTGATTGCCCCGGGGCCTCTGACCGGGGTCACTGCTCACCCTTTGGCCCCTCTCGGCCCAGACCCTGTGTCAGCTATCCCAGCAGAAAAAGAAGATGCGGACCCTCTCAGCAAGTCAGGTGAGGAAACCCAGGAGCAGGGTCATGACCCCGCAGAGGTCGGGGCTCCTGGTGAAGAGGATCAGATCTTGTGTGACTTCTGTCTTGGGGCCAGCAGAGTAAGGGCAGTGAAATCCTGTCTGACCTGCATGGTGAACTACTGTGAGGAGCACCTGCGGCCACACCAGGAGAACAGCAAACTGCACAGCCACCAGCTAACCGAACCCGCAAAGGACCAGGATCTACGCACCTGCCCTGCCCACCACAGCCCTTTGGTTTCCTTCTGCCACACGCACCAGCAGTGTATCTGCCAGGAATGCGGGGAGGGTGAACACAGAGGCGACAGTACTGTCTCCCTGGATGCAGCCCGCAGGAACAAAGAG
Seq A exon
GTGGACCTTCGGTGTATGCAGTTGGACCTGGAGCAGAAGCTTAAGTTGAATGAAAATGCCATTGCCAGGCTCCAAGCTAACCATAAGTCTGTTTTG
Seq C2 exon
GTGTCGGTGTCAGAGGTGAAGGTGGTAGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCTGTACGGAAGGCCCAGGCAGATGTGATGGTCTTCCTAGAGGAGAAAGAACAGGCTGCACTGAATCAAGTCAACAGCATCAAAACCCATCTGGAGCACAGGAGCCTCGAGATGGAGAAAAGCAAGCAGGAGCTGGAGAGGCTGGCCGCCATCAGCAACACTGTGCTGTTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047821-'1-8,'1-3,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=24.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGACCAGGATCTACGC
R:
CTTCACCTCTGACACCGACAC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types