GgaEX7008375 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSV9]
Coordinates
chr13:7709167-7710504:-
Coord C1 exon
chr13:7710199-7710504
Coord A exon
chr13:7709514-7709609
Coord C2 exon
chr13:7709167-7709189
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTCGTTTTCTCAGAAT
3' ss Score
10.54
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGATCCTGTGTGATTTCTGCCTTGAGAAGCCTCAGCCAGCGGTGAAGACGTGCATGAACTGCGAGACCTCCCTGTGCCAGGCCCACCTGGGCAAGCACAGCACAAAGGCTTTCCTGACAAGCCACGTCCTGGTGGAGCCCTGTGACGCTCGTGTTTTGGCAGAAAGGAGATGCTCCCAGCACGGCAAGCTGCTGGAATGCTACTGTGTGACAGACTCGGTCTGTGTCTGCATGCTGTGCTGTGCCACCAGCTCCCACAGGAGCCATGAAATCATTAGTGTGGAAGAGGCTTTTAGCCAAGCACAG
Seq A exon
AATGATTTTCCTAAAACTCTGCGAACACTGAAAAAACACAAAGCTGCAGTGAATAAAAGCTTGGAAAATCTGCTGACACAACAGGAGAAGATAAAG
Seq C2 exon
GGAAAGATAAAAACCATCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206-'1-2,'1-1,3-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=40.2),PF131661=AAA_13=PU(21.1=26.5)
A:
PF131661=AAA_13=FE(24.2=100)
C2:
PF131661=AAA_13=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]