GgaINT1000203 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSV9]
Coordinates
chr13:7709514-7710504:-
Coord C1 exon
chr13:7710199-7710504
Coord A exon
chr13:7709610-7710198
Coord C2 exon
chr13:7709514-7709609
Length
589 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTCCCTCTCGTTTTCTCAGAAT
3' ss Score
10.54
Exon sequences
Seq C1 exon
GAGATCCTGTGTGATTTCTGCCTTGAGAAGCCTCAGCCAGCGGTGAAGACGTGCATGAACTGCGAGACCTCCCTGTGCCAGGCCCACCTGGGCAAGCACAGCACAAAGGCTTTCCTGACAAGCCACGTCCTGGTGGAGCCCTGTGACGCTCGTGTTTTGGCAGAAAGGAGATGCTCCCAGCACGGCAAGCTGCTGGAATGCTACTGTGTGACAGACTCGGTCTGTGTCTGCATGCTGTGCTGTGCCACCAGCTCCCACAGGAGCCATGAAATCATTAGTGTGGAAGAGGCTTTTAGCCAAGCACAG
Seq A exon
GTAAGAGGCTGCCAGGACAGCTGCCTGGACTGGGACTGCTCGAGGGAAAACCTGGGGCTCTGGGATATGGAGAGGTGCCCGCAGCGTGAGGCCAGAACATCTCCTGGGCTTCAGGTGTGCAGGCTCCCACCTTGGGATACGTGGCTTTGGGTGTGGGCTTTGCCTCAGCCTGTCTCTGGGCCTGCCCCTTGGGCTGTAAAACAATCTCATGAGCAGTCAGTGGGACCGAGTGCTTGTGGCTTTGCTTTTAGTCCTCGATGCATCTTCGAACAGGAGCATCAGCCTCAGCTGTGTTTGTGCAATGAAAATTAATGGCAGTGTAACAGAAAGGAAGCTGCCACCAATAAAAAGTAGCTTTCCACGTGGCTGTTGTGCATGGACAGTTGTTGTTTTGAAAGAATCTTCCCCACATTCACAATCGTGAGTTCTGTTCAGGGGCAAAACCTTCCAGTAAAGCTTTTATGTGCTGATTTGTTGTGAGAGCAGACAGTGAACAAACTTTTGCTGGGTCTGACCTCACCCATCTCCCTAACATTGCCCATCTTGTGCCCTTATGTCTGTACCTCATACCTCCCTCTCGTTTTCTCAG
Seq C2 exon
AATGATTTTCCTAAAACTCTGCGAACACTGAAAAAACACAAAGCTGCAGTGAATAAAAGCTTGGAAAATCTGCTGACACAACAGGAGAAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206:ENSGALT00000001825:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=40.2),PF131661=AAA_13=PU(21.1=26.5)
A:
NA
C2:
PF131661=AAA_13=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAAGACGTGCATGAACT
R:
TTCTCCTGTTGTGTCAGCAGA
Band lengths:
355-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]