Special

MmuEX6091114 @ mm9

Exon Skipping

Gene
ENSMUSG00000070332 | 4933422H20Rik
Description
RIKEN cDNA 4933422H20 gene [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115302395-115306858:+
Coord C1 exon
chr11:115302395-115303059
Coord A exon
chr11:115306330-115306425
Coord C2 exon
chr11:115306625-115306858
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCCGCCCCTTCCAGGTG
3' ss Score
11.32
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATAACTTCTGTATGACTTGCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCCAAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAGCCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTGTGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCCTATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAG
Seq A exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAACCAGATGCTGATCATTGCCTCTGACAGTCAGAAACACCAGGGACGAGTGAGTTTTCTCTCG
Seq C2 exon
AAACTGATTCAGACCATGCGAGACGAGGTGGACACCTGCTTCTCAGAGATCCTCCATGAGATTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAAGGAGGAGGCGGCCGCCCTAGGAAAGCTGGGCAACTCTATCCAGCAAAGCCACAACCGGCTGCTCAAGTTGGAGGGGGACAGCGTCTGGCTCCACAGCCTGCTCGCCAACAGGAGTGATGAGCAATTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.149 A=0.031 C2=0.013
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.0)

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000091442





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000091442f5408A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:73070404-73070499 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:56995978-56996073 
BtaEX6090896
([1])
Chicken
(galGal4)
chr13:7709514-7709609 
ALTERNATIVE
GgaEX7008375
([2])
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr12:46675118-46675213 
HIGH PSI
DreEX0081145
(trim16)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGAGGAGCACAAGAACCATG

				
R: 
CGCCTCCTCCTTCTCCACAAA

				
Band lengths: 
170-266

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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