MmuEX6091114 @ mm10
Exon Skipping
Gene
ENSMUSG00000070332 | Trim80
Description
tripartite motif-containing 80 [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115441081-115445544:+
Coord C1 exon
chr11:115441081-115441745
Coord A exon
chr11:115445016-115445111
Coord C2 exon
chr11:115445311-115445544
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCCGCCCCTTCCAGGTG
3' ss Score
11.32
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATAACTTCTGTATGACTTGCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCCAAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAGCCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTGTGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCCTATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAG
Seq A exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAACCAGATGCTGATCATTGCCTCTGACAGTCAGAAACACCAGGGACGAGTGAGTTTTCTCTCG
Seq C2 exon
AAACTGATTCAGACCATGCGAGACGAGGTGGACACCTGCTTCTCAGAGATCCTCCATGAGATTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAAGGAGGAGGCGGCCGCCCTAGGAAAGCTGGGCAACTCTATCCAGCAAAGCCACAACCGGCTGCTCAAGTTGGAGGGGGACAGCGTCTGGCTCCACAGCCTGCTCGCCAACAGGAGTGATGAGCAATTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332-'1-8,'1-5,5-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.031 C2=0.013
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGCACAAGAACCATG
R:
CGCCTCCTCCTTCTCCACAAA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types