RnoEX6050489 @ rn6
Exon Skipping
Gene
ENSRNOG00000028812 | Trim80
Description
tripartite motif protein 80 [Source:RGD Symbol;Acc:1311352]
Coordinates
chr10:103993004-103998018:+
Coord C1 exon
chr10:103993004-103993668
Coord A exon
chr10:103997496-103997591
Coord C2 exon
chr10:103997785-103998018
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCCTCTCCTTCCAGGTG
3' ss Score
14.07
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ACAACTTCTGCATGACATGCCTTCAGAGTTTCTGGGACCACCAGGCTGACACTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTTCCGAGCAGGCCCCGCCTCTGCAAGAACGTCATTCTCGGAGAGATGGTGGCTTGTTTCACCCTGGCCAAGAGCCAGACCTCAGGGCCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCTCAGAAGCTGAAGGCAACCAAGTCGTGCCTGCAGTGCATGGCTTCCTTGTGCGAGAAGCATCTGCACAGCCATTTTGAGGACCCGTTGTTCCAGGAACACCAGCTGTTGGACCCGGTGTGGGACCTCAAGAACCGCTTGTGCCGTAAGCATCGCAAGCTCCGGCAGATGTACTGCCGCACCGAGGGCAGCTGCGTGTGCGGGGCCTGCCTCCTGGAGGAGCACCAGAACCACGACACAACCCCGCTGGAGGATGAACGGGCCCGCAAGGAG
Seq A exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAATCAAATGCTAATCATTGCCTCGGACAGCCAGAAACACCAGGGACGAGTGAGTTTCCTCTCG
Seq C2 exon
AAACTGATTCAGACGATGCGAGAAGAGGTGAACACCTGCTTCTCAGAGATCCTCCATGAGGTTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAATGAGGAGACAGTTGCCCTGGGAATGCTGGGTAACTCCATGCAACAAAGCCACAGCCGGCTCCTGAAGTTGGAGGGGGACAGCGTCTGGCTCCACGGCCTGCTGGCCAACAAGAGCGATGAGCAGTTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028812-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.062 C2=0.013
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCGCTTGTGCCGTAAG
R:
ACCTCTTCTCGCATCGTCTGA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]