BtaEX6090896 @ bosTau6
Exon Skipping
Description
LOC526787 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1LZH3]
Coordinates
chr19:56995541-56999219:-
Coord C1 exon
chr19:56998552-56999219
Coord A exon
chr19:56995978-56996073
Coord C2 exon
chr19:56995541-56995774
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCTCACCCTCTCACCTCAGGTC
3' ss Score
10.37
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
ACAACTTCTGCATGAGCTGCCTCCAGGGTTTCTGGGACTACCAGGCCACCATGGGCGAGCCACTCTACTGCCCCCAGTGCCGGGAGAGCTTCCCCACGCGGCCTCGCCTCTGCAAGAACGTCATCCTGGAGGAGATGGTGACATGCTTCACCCAGGCCAAGGGCCAGACCTTGGGGTCCTCACGGAGCCTGGCCGGGCCCAGGGACGTGCCCTGCGACTTCTGTGCCCCTGAGAAGCTCAAGTCCGTCAAGTCGTGCCTGCAGTGCATGGCCTCCCTGTGCGAGAAGCACCTGCGCAGCCACTTAGAGGACCAGGTGTTCCACGGGCACCAGCTGCTGGAGCCCGTGTGGGACCTCAAGAGCCGGCTGTGCCGCAAGCACCGCAAGCTCCGGCGGCTGTACTGCCGCACCGAGGGCTGCTGCGTGTGCGGGGCCTGCCTGCTGGAGGAGCACAAGAACCACGACACCATCCCGCTGGAGGAGGAGCGCGCACGCAAGGAG
Seq A exon
GTCGAGGTTCGGAAGGTCCAGGCCAACGTGGAGAACCAGATGTTGATCATCACCTCTGACAGCCAAAAGCACCGGGGCCAGGTGGCTTTTCTCTCG
Seq C2 exon
AAATTGATCCAGACGACTCGGGACGAGGTGAACGCCTGCTTCTCAGAGATCATCCAGGAGATCAAACAGATGCAGATGAAGGTGCTGGATTTCGTGGAGAAAGAGGAGGCTGCCGCCCTGGGGAAGCTGGGCGGCTCCATCCAGCAGAGTCACAACCGGCTCCTGAAGCTGGAGGGGGACAGCATCTGGCTCCGAAGCCTGCTTGCCAACCGCAGCGACCAGCAGTTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026645-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.7),PF0064319=zf-B_box=WD(100=17.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGCACAAGAACCAC
R:
AGCCTCCTCTTTCTCCACGAA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]