BtaEX0000431 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21774306-21780765:+
Coord C1 exon
chr12:21774306-21774394
Coord A exon
chr12:21778854-21778915
Coord C2 exon
chr12:21780685-21780765
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGGACTAACTTCTTTTCTAGGAA
3' ss Score
8.89
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGAGATGCTGGCGTTCTCCATGGAAGTGAAAGAGTGGATGGCTCAAGACAAGGACAATATCATAGTGGTTCACTGTAAGGGAGGCAAAG
Seq A exon
GAAGAACTGGAACTATGGTCTGTGCCTACCTTCTTGCCAGTGAGATATTTGCCACTGCGGAG
Seq C2 exon
GACAGCCTGTATTATTTTGGAGAACGGCGAACAGATAAATCCACTAGCAGTAAATTTCAGGGAATAGAGACTCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(23.6=100)
A:
PF0078215=DSPc=FE(15.7=100)
C2:
PF0078215=DSPc=PD(17.3=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGGCGTTCTCCATG
R:
AGTGGATTTATCTGTTCGCCGT
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development