RnoEX6055993 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74591094-74601142:-
Coord C1 exon
chr16:74601054-74601142
Coord A exon
chr16:74593219-74593280
Coord C2 exon
chr16:74591094-74591174
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGGCCTTCTTTTCTTTTTAGGGA
3' ss Score
11.63
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATGATTGGATGGCCCAAGATCCTGAAAATGTTGTAGCAATTCACTGTAAGGGAGGAAAAG
Seq A exon
GGAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTCCTAAACGCAAAG
Seq C2 exon
GCAAGTCTGTACTTTTTTGGAGAGCGACGGACAGATAAAAGTAACAGCTCTAAGTTTCAAGGAGTAGAGACCCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'26-30,'26-28,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(24.2=100)
A:
PF0078215=DSPc=FE(16.1=100)
C2:
PF0078215=DSPc=PD(16.9=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTAAATGATTGGATGGCCC
R:
GGGGTCTCTACTCCTTGAAACT
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]