MmuEX6034803 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22346021-22351523:+
Coord C1 exon
chr8:22346021-22346109
Coord A exon
chr8:22349326-22349387
Coord C2 exon
chr8:22351443-22351523
Length
62 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTTTTTTTTCTAGGAA
3' ss Score
11.81
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATAATTGGATGGCTCAAGATCCTGAAAATGTTGTCGCGATTCACTGTAAGGGAGGAAAAG
Seq A exon
GAAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTTTTAAATGCAAAG
Seq C2 exon
GAAAGTCTGTACTTTTTTGGAGAGCGGCGGACAGATAAAAGCAACAGCTCGAAGTTCCAAGGAATAGAGACCCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'24-30,'24-21,28-30=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF145661=PTPlike_phytase=FE(20.4=100)
A:
PF145661=PTPlike_phytase=PD(8.2=57.1)
C2:
PF0078215=DSPc=PD(17.6=81.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTGTTCTCCAAGGAAGT
R:
CTTGGAACTTCGAGCTGTTGC
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types