GgaEX6006027 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174776544-174778851:+
Coord C1 exon
chr1:174776544-174776632
Coord A exon
chr1:174777827-174777888
Coord C2 exon
chr1:174778771-174778851
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTGCTTGTAATACAGGTA
3' ss Score
7.43
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGACATGCTGAAATTCACTGCCAGTGTCCGTGAATGGATGAATCAAGATGAGAAGAATATCATAGCAATTCACTGTAAAGGAGGCAAGG
Seq A exon
GTAGAACTGGAACAATGGTCTGTACCTGGCTTATACACAGTGACCAGTTTGAGAGTGCAAAG
Seq C2 exon
GAGAGTTTAGACTACTTTGGAGAGAGAAGAACTGACAGAACTATGAGTACCAAATTTCAAGGAGTTGAAACTCCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(23.4=100)
A:
PF0078215=DSPc=FE(15.6=100)
C2:
PF0078215=DSPc=PD(17.2=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGCTGAAATTCACTGCC
R:
TAGTTCTGTCAGTTCTTCTCTCTCCA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]