BtaEX0000527 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28253088-28254021:-
Coord C1 exon
chr25:28253827-28254021
Coord A exon
chr25:28253412-28253495
Coord C2 exon
chr25:28253088-28253144
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTGCCATCTCTGCAGGTA
3' ss Score
10.46
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
AGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGCACAGTGGACCCCATCATGGAAAAGTTCAACTCGTCCATCACGTACGACCGGCACCTCTGGGAGGCGGACGTGCAGGGCAGCAAAGCCTACAGCCGGGGCCTGGAGAAGGCGGGGCTCCTCACCAAAGCCGAGATGGACCAGATACTCCATGGCCTGGACAAG
Seq A exon
GTAGCTGAGGAGTGGGCTCAGGGCACCTTCAAACTAAACCCCAATGATGAGGACATCCATACGGCCAATGAGCGGCGTCTGAAG
Seq C2 exon
GAGCTCATTGGTGAAACCGCGGGGAAGCTGCACACGGGACGAAGTCGGAACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'6-9,'6-8,9-9
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.158
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PU(19.7=89.2)
A:
PF0020615=Lyase_1=FE(9.2=100)
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGACCCCATCATGGAA
R:
CGCGGTTTCACCAATGAGCTC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development