GgaEX6017220 @ galGal3
Exon Skipping
Gene
ENSGALG00000002558 | ARLY1_CHICK
Description
NA
Coordinates
chr19:4916799-4918401:-
Coord C1 exon
chr19:4918207-4918401
Coord A exon
chr19:4917207-4917290
Coord C2 exon
chr19:4916799-4916855
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTGACATTTACAGATC
3' ss Score
9.63
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGGGATAAACTTTTGGGAGGAAGATTTGTTGGAAGCACAGATCCCATCATGGAGATTCTCAGCTCTTCTATATCCACTGAGCAGAGACTGACTGAAGTTGATATCCAGGCAAGCATGGCTTATGCCAAAGCCTTGGAGAAGGCTAGCATCCTGACTAAAACTGAGCTGGAGAAGATCCTGAGTGGCCTGGAAAAG
Seq A exon
ATCTCTGAGGAATCATCTAAGGGAGTCCTTGTAATGACCCAAAGTGATGAAGATATCCAGACTGCCATTGAACGCAGACTGAAG
Seq C2 exon
GAGCTGATTGGGGATATAGCTGGAAAGCTGCAGACTGGAAGAAGCAGGAATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PU(19.7=89.2),PF0270212=KdpD=PU(31.2=60.0)
A:
PF0020615=Lyase_1=FE(9.2=100),PF0270212=KdpD=FE(21.6=100)
C2:
PF0020615=Lyase_1=FE(6.1=100),PF0270212=KdpD=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGAGCAGAGACTGACT
R:
CCTGCTTCTTCCAGTCTGCAG
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]