GgaEX6017220 @ galGal4
Exon Skipping
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4950038-4951640:-
Coord C1 exon
chr19:4951446-4951640
Coord A exon
chr19:4950446-4950529
Coord C2 exon
chr19:4950038-4950094
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTGACATTTACAGATC
3' ss Score
9.63
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGGGATAAACTTTTGGGAGGAAGATTTGTTGGAAGCACAGATCCCATCATGGAGATTCTCAGCTCTTCTATATCCACTGAGCAGAGACTGACTGAAGTTGATATCCAGGCAAGCATGGCTTATGCCAAAGCCTTGGAGAAGGCTAGCATCCTGACTAAAACTGAGCTGGAGAAGATCCTGAGTGGCCTGGAAAAG
Seq A exon
ATCTCTGAGGAATCATCTAAGGGAGTCCTTGTAATGACCCAAAGTGATGAAGATATCCAGACTGCCATTGAACGCAGACTGAAG
Seq C2 exon
GAGCTGATTGGGGATATAGCTGGAAAGCTGCAGACTGGAAGAAGCAGGAATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PU(19.7=89.2)
A:
PF0020615=Lyase_1=FE(9.2=100)
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGAGCAGAGACTGACT
R:
CCTGCTTCTTCCAGTCTGCAG
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]