HsaEX0006288 @ hg38
Exon Skipping
Gene
ENSG00000126522 | ASL
Description
argininosuccinate lyase [Source:HGNC Symbol;Acc:HGNC:746]
Coordinates
chr7:66076039-66088921:+
Coord C1 exon
chr7:66076039-66076093
Coord A exon
chr7:66082368-66082451
Coord C2 exon
chr7:66088807-66088921
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGCTACCCACTACAGGTG
3' ss Score
7.08
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
ACCCGGAGGACCGAAGCTTCCGGACGACGAGGAACCGCCCAACATGGCCTCGGAG
Seq A exon
GTGGCTGAGGAGTGGGCCCAGGGCACCTTCAAACTGAACTCCAATGATGAGGACATCCACACAGCCAATGAGCGCCGCCTGAAG
Seq C2 exon
CCGAGTTCCTGTTCTGGGCTTCGCTGTGCATGACCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTGCACCAAGGAATTCAGCTTCGTGCAGCTCTCAGATGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126522_MULTIEX2-2/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020615=Lyase_1=FE(11.2=100)
C2:
PF0020615=Lyase_1=FE(12.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCGAAGCTTCCGGA
R:
GTAGGCATCTGAGAGCTGCAC
Band lengths:
163-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development