GgaEX6017215 @ galGal3
Exon Skipping
Gene
ENSGALG00000002576 | F1NI02_CHICK
Description
NA
Coordinates
chr19:4904497-4906150:-
Coord C1 exon
chr19:4905956-4906150
Coord A exon
chr19:4904874-4904957
Coord C2 exon
chr19:4904497-4904553
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTGACATTTATAGATC
3' ss Score
9.39
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GGAGATAAACTCTGGGGGGGAAGATTCAGCGGAAGCACAGATCCCATCATGGAGATGCTCAACTCTTCCATTGCCTGTGATCAGAGACTGTCTGAAGTTGATATCCAGGGGAGCATGGCTTATGCCAAAGCATTGGAGAAGGCTGGCATCCTAACTAAAACTGAGCTGGAGAAGATCCTGAGTGGCCTGGAAAAG
Seq A exon
ATCTCTGAGGAATGGTCTAAGGGAGTCTTTGTGGTGAAACAAAGTGATGAGGATATTCACACTGCCAATGAACGCAGACTGAAG
Seq C2 exon
GAGCTGATTGGTGATATAGCTGGAAAGCTGCACACTGGAAGGAGCAGGAATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576-'2-6,'2-4,3-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PU(19.7=85.3)
A:
PF0020615=Lyase_1=FE(9.2=100)
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAACTCTTCCATTGCCT
R:
TTCCAGTGTGCAGCTTTCCAG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]