GgaEX6017215 @ galGal4
Exon Skipping
Gene
ENSGALG00000002576 | CRYD2
Description
argininosuccinate lyase [Source:RefSeq peptide;Acc:NP_001025885]
Coordinates
chr19:4937736-4939398:-
Coord C1 exon
chr19:4939195-4939398
Coord A exon
chr19:4938113-4938196
Coord C2 exon
chr19:4937736-4937792
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTGACATTTATAGATC
3' ss Score
9.39
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
CTCTCTCAGGGAGATAAACTCTGGGGGGGAAGATTCAGCGGAAGCACAGATCCCATCATGGAGATGCTCAACTCTTCCATTGCCTGTGATCAGAGACTGTCTGAAGTTGATATCCAGGGGAGCATGGCTTATGCCAAAGCATTGGAGAAGGCTGGCATCCTAACTAAAACTGAGCTGGAGAAGATCCTGAGTGGCCTGGAAAAG
Seq A exon
ATCTCTGAGGAATGGTCTAAGGGAGTCTTTGTGGTGAAACAAAGTGATGAGGATATTCACACTGCCAATGAACGCAGACTGAAG
Seq C2 exon
GAGCTGATTGGTGATATAGCTGGAAAGCTGCACACTGGAAGGAGCAGGAATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
83%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PU(19.7=85.3)
A:
PF0020615=Lyase_1=FE(9.2=100)
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAACTCTTCCATTGCCT
R:
TTCCAGTGTGCAGCTTTCCAG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]