BtaEX0000709 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:34019835-34021307:-
Coord C1 exon
chr12:34021208-34021307
Coord A exon
chr12:34020678-34020776
Coord C2 exon
chr12:34019835-34019880
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTCTTTATCTTACAGCAA
3' ss Score
10.24
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CACGGCCAAGTACAGCGTGGTGACGTTTCTACCTCGATTCTTGTACGAGCAGATCAGGAGAGCTGCCAATGCCTTCTTCCTCTTCATTGCCTTATTACAG
Seq A exon
CAAATTCCAGATGTATCTCCAACAGGAAGATACACCACCCTGGTGCCATTGATCATTATTTTAACAATCGCAGGCATCAAAGAGATTGTAGAAGATTTT
Seq C2 exon
AAGCGACATAAGGCAGACAATGCAGTTAACAAAAAGAAAACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCAAGTACAGCGTG
R:
TGGTTTTCTTTTTGTTAACTGCATTG
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development