GgaEX6006312 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176021237-176022912:+
Coord C1 exon
chr1:176021237-176021336
Coord A exon
chr1:176021920-176022018
Coord C2 exon
chr1:176022867-176022912
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTCTGTTCACAGCAA
3' ss Score
10.63
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CACAGCCAAGTACAGTGTGGTGACTTTTCTACCTCGATTCCTGTATGAGCAGATAAGAAAAGCTGCAAATGCGTTCTTCCTCTTCATTGCCTTACTGCAG
Seq A exon
CAAATTCCAGATGTCTCTCCGACAGGAAGATATACCACCTTGGTGCCATTGCTATTTATTTTGACAGTTGCTGGCATCAAAGAAATCATAGAAGATTAT
Seq C2 exon
AAAAGACATAAGGCAGACAGTGCAGTGAACAAAAAGAAAACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAAGTACAGTGTGGTG
R:
ACTGTTTTCTTTTTGTTCACTGCACT
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]