DreEX6094843 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21311978-21317717:-
Coord C1 exon
chr24:21317618-21317717
Coord A exon
chr24:21312153-21312251
Coord C2 exon
chr24:21311978-21312023
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTACTTTGTCAAATGCAGCAA
3' ss Score
6.92
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CACGGCTAAATACGGGATCCTTACTTTCCTGCCTCGGTTCCTGTATGAGCAGATCAGGCGAGCAGCTAATGCTTTTTTCCTTTTCATCGCTCTTATGCAG
Seq A exon
CAAATCCCTGATGTCTCTCCGACGGGTCGCTACACGACTCTGGTGCCTCTTATCTTCATTCTGACAGTAGCAGGAATCAAGGAGATCATTGAGGATTAT
Seq C2 exon
AAAAGGCATAAAGCAGACAACACGGTGAACAAGAAGAAGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'8-8,'8-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Skipping Isoform:
ENSDART00000153695fB1422
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCTAAATACGGGATCCT
R:
TTGTCTTCTTCTTGTTCACCGTGT
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]