BtaEX6030996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63087222-63094684:-
Coord C1 exon
chr6:63094585-63094684
Coord A exon
chr6:63093068-63093166
Coord C2 exon
chr6:63087222-63087267
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTCCTTCAAATAGCAA
3' ss Score
7.35
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CACTGCAAAATACAACATAATCACATTCCTTCCAAGATTTCTCTACTCTCAGTTCAGAAGAGCCGCTAATTCATTTTTTCTCTTTATTGCACTGCTCCAG
Seq A exon
CAAATACCTGATGTATCACCAACAGGTCGCTATACAACACTGGTTCCTCTCTTATTTATTTTGGCTGTGGCAGCTATCAAAGAGATAATAGAAGATATT
Seq C2 exon
AAACGACATAAAGCTGATAATGCAGTAAACAAGAAGCAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAAAATACAACATAATCACAT
R:
TGTGTCTGCTTCTTGTTTACTGCA
Band lengths:
144-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]