DreEX6059086 @ danRer10
Exon Skipping
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:45981387-45995541:+
Coord C1 exon
chr14:45981387-45981489
Coord A exon
chr14:45988653-45988751
Coord C2 exon
chr14:45995496-45995541
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTCTTGTTGACAGCAA
3' ss Score
5.96
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CAGCACTGCAAAGTACAACGTCCTCACGTTCCTGCCTCGGTTCCTGTACTCTCAGTTCAGAAGAGCCGCAAACTCTTTCTTCCTGTTCATCGCACTTCTACAG
Seq A exon
CAAATCCCTGATGTGTCGCCAACGGGACGATGGACAACGCTGGTGCCATTACTTTTCATCCTGGTGGTTGCGGCAGTGAAGGAGATTATTGAAGATCTG
Seq C2 exon
AAACGTCACAATGCTGATAATGTTGTCAACAAGAAAGAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(23.0=51.5),PF121483=DUF3590=PU(14.3=24.2)
C2:
PF0012215=E1-E2_ATPase=FE(20.3=100),PF121483=DUF3590=FE(26.8=100),PF132751=S4_2=PU(17.1=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAAAGTACAACGTCC
R:
TGTGTCTCTTTCTTGTTGACAACA
Band lengths:
145-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]