HsaEX6084120 @ hg19
Exon Skipping
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42618050-42627730:-
Coord C1 exon
chr4:42627631-42627730
Coord A exon
chr4:42626553-42626651
Coord C2 exon
chr4:42618050-42618095
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCCAAACAGCAA
3' ss Score
10.34
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CACTGCAAAATACAACATAATCACATTCCTTCCAAGATTTCTCTACTCTCAGTTCAGAAGAGCTGCTAATTCATTTTTTCTCTTTATTGCACTGCTGCAG
Seq A exon
CAAATACCTGATGTGTCACCAACAGGTCGTTATACAACACTGGTTCCTCTCTTATTTATTTTAGCTGTGGCAGCTATCAAAGAGATAATAGAAGATATT
Seq C2 exon
AAACGACATAAAGCTGATAATGCAGTGAACAAGAAACAAACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(13.3=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAAAATACAACATAATCACAT
R:
GCGTTTGTTTCTTGTTCACTGCA
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)