GgaEX6035635 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70062600-70065825:+
Coord C1 exon
chr4:70062600-70062699
Coord A exon
chr4:70063824-70063922
Coord C2 exon
chr4:70065780-70065825
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCTTTTTAATAGCAA
3' ss Score
8.96
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CACTGCAAAGTACAACATTATCACATTCCTGCCAAGGTTCCTTTATTCCCAGTTCAGAAGAGCTGCCAATGCATTTTTTCTTTTTATTGCACTACTTCAG
Seq A exon
CAAATTCCAGATGTATCACCAACAGGCCGTTACACAACTTTGGTCCCTCTCTTATTTATTTTAGCCGTAGCCGCAGTGAAGGAGATAATAGAGGATATT
Seq C2 exon
AAAAGGCATAAAGCTGATAATGCGGTGAACAAGAAACAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(23.3=51.5),PF121483=DUF3590=PU(18.6=33.3)
C2:
PF0012215=E1-E2_ATPase=FE(20.5=100),PF121483=DUF3590=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCAAAGTACAACATTATCACA
R:
GAGTTTGTTTCTTGTTCACCGCA
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]