MmuEX6017960 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68196896-68204430:-
Coord C1 exon
chr5:68204331-68204430
Coord A exon
chr5:68203327-68203425
Coord C2 exon
chr5:68196896-68196941
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTTATCTTACCTTTTTCAGCAA
3' ss Score
6.57
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TACTGCAAAATACAACGTGATCACATTCCTTCCGAGGTTCCTCTATTCTCAGTTCCGAAGAGCGGCTAATTCGTTCTTTCTCTTTATTGCCCTGCTCCAG
Seq A exon
CAAATTCCTGATGTGTCGCCGACCGGTCGTTACACAACACTGGTTCCTCTCTTATTTATTTTAGCTGTGGCTGCTATTAAAGAGATAATAGAAGATATT
Seq C2 exon
AAACGACACAAGGCTGATAATGCTGTGAACAAGAAACAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'5-8,'5-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(23.6=51.5),PF121483=DUF3590=PU(18.6=33.3)
C2:
PF0012215=E1-E2_ATPase=FE(20.8=100),PF121483=DUF3590=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAAATACAACGTGATCACA
R:
TGTGTCTGTTTCTTGTTCACAGC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: