GgaEX6006312 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181067759-181069434:+
Coord C1 exon
chr1:181067759-181067858
Coord A exon
chr1:181068442-181068540
Coord C2 exon
chr1:181069389-181069434
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTCTGTTCACAGCAA
3' ss Score
10.63
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CACAGCCAAGTACAGTGTGGTGACTTTTCTACCTCGATTCCTGTATGAGCAGATAAGAAAAGCTGCAAATGCGTTCTTCCTCTTCATTGCCTTACTGCAG
Seq A exon
CAAATTCCAGATGTCTCTCCGACAGGAAGATATACCACCTTGGTGCCATTGCTATTTATTTTGACAGTTGCTGGCATCAAAGAAATCATAGAAGATTAT
Seq C2 exon
AAAAGACATAAGGCAGACAGTGCAGTGAACAAAAAGAAAACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAAGTACAGTGTGGTG
R:
ACTGTTTTCTTTTTGTTCACTGCACT
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]