BtaEX0000775 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44330156-44337685:+
Coord C1 exon
chr22:44330156-44330301
Coord A exon
chr22:44336070-44336284
Coord C2 exon
chr22:44337493-44337685
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTATTGTATTTTAGGCC
3' ss Score
11.87
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAGAAAAAAATCCCGTGTTCAGAGGAGTTCTCACTGAGTAAGACCCTGGGTGATCCAGTAACAATCAGAGCCTGGAATATTGCTGGATTGCCTACAGATACTTTCTCTGTAGACAATGGAGTGATTGTTAACAACTCCAGGCGCTG
Seq A exon
GCCTTTAATGATTGACCCCCAGGGTCAAGCCAATAAGTGGATCAAAAACTCTGAGAAAGAAAATCAACTTAGTGTTATTAAGCTATCAGATGCAGACTATATGAGAACACTGGAAAACTGTATTCAATTTGGAACTCCACTTCTATTAGAAAATGTTGGTGAAGAACTGGATCCATCCTTGGAACCTTTACTACTTAGACAAACTTTTAAACAAG
Seq C2 exon
GTGGCATTGATTGCATCAGACTTGGTGAGGTCATTATTGAGTATTCCTTTGATTTCAAGTTTTATATCACCACAAAGTTGAGAAATCCACATTATATGCCAGAGCTGGCTACAAAGGTATCTTTGCTCAATTTCATGATAACTCCAGAAGGACTTGAAGATCAATTACTTGGTATTGTTGTTGCAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(14.7=69.4)
A:
PF127812=AAA_9=FE(31.2=100)
C2:
PF127812=AAA_9=FE(27.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGACCCTGGGTGATCCA
R:
TCTCCTTTGCAACAACAATACCA
Band lengths:
302-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development