MmuEX6040091 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27664093-27668147:+
Coord C1 exon
chr14:27664093-27664238
Coord A exon
chr14:27666882-27667096
Coord C2 exon
chr14:27667955-27668147
Length
215 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCTCTTCATTTCCAGGCC
3' ss Score
11.68
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
AAGAAAAAATTCCCGTGTTCAGAGGAGTTCTCACTGAGTAAAACCTTGGGGGATCCAGTCAAGATTAGAGCTTGGAATATTGCCGGGCTACCAACAGACGCGTTCTCCATAGACAACGGTGTGATCGTTAATAATTCTAGACGGTG
Seq A exon
GCCTTTAATGATTGACCCCCAGGGTCAAGCCAATAAATGGATCAAAAACTCTGAGAAGGATAATCAGCTGAGTGTGATTAAGCTGTCGGACACGGACTATATGAGAACCTTGGAGAACTGCGTTCAGTTCGGAACCCCGCTTCTCCTGGAGAACGTTGGCGAAGACTTGGATCCCTCCTTGGAGCCTTTGTTGCTGAAACAAACTTTCAAACAAG
Seq C2 exon
GTGGTATTGATTGCATCAGACTTGGTGAAGTCATTATTGAATATTCTTTTGATTTTAAATTTTATATCACCACAAAACTGAGAAATCCGCACTACATGCCAGAACTGGCTACAAAAGTGTCTTTGCTCAATTTCATGATAACTCCAGAAGGGCTTGAAGATCAATTACTGGGCATTGTTGTTGCAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'50-52,'50-51,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(14.7=69.4)
A:
PF127812=AAA_9=FE(31.2=100)
C2:
PF127812=AAA_9=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTGTTCAGAGGAGTTCT
R:
TCTTCAAGCCCTTCTGGAGTT
Band lengths:
296-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: