DreEX6079843 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19594784-19595608:-
Coord C1 exon
chr23:19595463-19595608
Coord A exon
chr23:19595144-19595358
Coord C2 exon
chr23:19594784-19594976
Length
215 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTGTCTCTTTTCCAGGCC
3' ss Score
12.09
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
TCTAAGAAGATCCCATCCTCTGATGACTTCTCTCTAAGTAAGACGCTTGGAGATCCAATCAAGATCAGAGCCTGGAACATTGCTGGCCTGCCCACCGACAGCTTCTCCATTGATAATGGGGTTATAGTGAGCAACTCCAGAAGATG
Seq A exon
GCCATTGATGATAGATCCACAGGGCCAGGCCAACAAATGGGTAAAAAATTCAGAACGGGACCATAATCTGAATGTGATCAAGCTAACTGATGCTGACTACATGAGAACACTTGAGAACTGCATCCAGTTTGGTACTCCACTGCTGCTGGAGAACGTTGGAGAGGAACTTGACCCCTCATTAGAGCCACTTTTGCTCAAACAAGTTTTCAAACAAG
Seq C2 exon
GTGGTGTGGACTGTATCCGATTGGGTGAAAGTGTGATTGAGTACTCTGCTGACTTTCGCTTTTACATCACTACAAAGCTGAGGAACCCTCATTATCTTCCTGAGTTAGCAACCAAAGTGTGCCTGTTGAACTTCATGATTACACCAGAGGGTCTTGAAGACCAGCTGCTTGGCATTGTGGTAGCAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'59-59,'59-58,60-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(14.7=69.4)
A:
PF127812=AAA_9=FE(31.2=100)
C2:
PF127812=AAA_9=FE(27.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGACGCTTGGAGATCCA
R:
TTGCTACCACAATGCCAAGCA
Band lengths:
296-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]