BtaEX6010450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84832722-84848972:-
Coord C1 exon
chr2:84848809-84848972
Coord A exon
chr2:84841179-84841333
Coord C2 exon
chr2:84832722-84832912
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCTTTCCCTTTCAGGAA
3' ss Score
14.27
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
AACCAAATCAAGGAGTGGACAAATTTGTGCAAAAGAAGAGATATCCCCTGCTCTGAAGATTATTCCCTTATGAATATCCTGGGAGAAGCAGTGACAATTCGAGCCTGGAATATTGCTGGATTACCTTCTGACTCATTTTCTATTGATAATGGGATTATCATAAT
Seq A exon
GAATGCAAGAAGGTGGCCTCTGATGATAGATCCTCAAGGTCAGGCTAATAAATGGATCAAGAACATGGAAAAAACCAATAGTCTTCACCTAATTAAATTAAGTGACCCTGACTATGTCAGAACTTTGGAAAACTGCATCCAATTTGGTACCCCTG
Seq C2 exon
TGTTGCTAGAAAATGTGGGAGAAGAACTGGATCCGATCCTGGAACCTCTTCTACTAAAACAGACCTTTAAGCAGGGTGGAAGTACATGCATACGACTTGGGGACTCTACCATTGAATATTCACCAGACTTCCGCTTTTATATTACTACCAAGCTAAGAAATCCTCATTATCTTCCTGAAACTTCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'50-55,'50-54,51-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.6=52.7)
A:
PF127812=AAA_9=FE(22.5=100)
C2:
PF127812=AAA_9=FE(27.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAAGAAGAGATATCCCCTGC
R:
AGAGTCCCCAAGTCGTATGCA
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]