DreEX6036423 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25171421-25174430:-
Coord C1 exon
chr9:25174267-25174430
Coord A exon
chr9:25172277-25172431
Coord C2 exon
chr9:25171421-25171611
Length
155 bp
Sequences
Splice sites
3' ss Seq
GAGATGTTTGTTCTCTGCAGAAA
3' ss Score
8.39
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CGAGCTACAGAGGAGTGGATTGACATGTGTAAGTCAAGAGGAATTCCTTGCTCCAAGAACATGTCACTGATGAACTCACTGGGTGAGCCGGTAAAAATCCGCAGCTGGACCATTGCTGGACTTCCTTCAGACAGCTTCTCCATTGACAATGCAATCATTATCTC
Seq A exon
AAATGCAAGGAGGTGGCCCTTGATGATTGACCCTCAGGGCCAGGCCAACAAGTGGCTGAAGAACATGGAGAAATCCAACAGTCTCCACGTGATCAAGCTCAGTGATGCCGACTTTGTGCGCACACTAGAAAACTGCATCCAATTTGGCACTCCAG
Seq C2 exon
TGTTGCTGGAGAATGTTGGGGAAGAACTGGACCCCATACTCGAGCCCCTGCTGCTGAAACAAACTTTTAAACAGGGTGGCAGTGTCTGCATTCGGCTGGGTGACTCCACTATTGAATATGCACCAGATTTCCGCTTTTATATAACAACTAAGTTACGAAATCCACATTATCTACCTGAGGTCTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.2=50.9)
A:
PF127812=AAA_9=FE(22.6=100)
C2:
PF127812=AAA_9=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCATTGCTGGACTTCC
R:
TTGACGGAGACCTCAGGTAGA
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]