RnoEX6039700 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60157002-60178027:-
Coord C1 exon
chr9:60177864-60178027
Coord A exon
chr9:60164485-60164639
Coord C2 exon
chr9:60157002-60157192
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTTCTCTGTTCCAGGAA
3' ss Score
12.32
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
CACCAAACCAAGGAATGGTCACACTCGTGTAAAGAAAGAGACATCCCCTGCTCAGATGACTACTCTCTTATGGGTACGCTGGGAGAAGCTGTGACGATTCGAGCTTGGAATATAGCTGGATTACCCTCCGACTTGTTCTCCATTGATAATGGGATCATTATAAT
Seq A exon
GAATGCAAGAAGGTGGCCTCTGATGATAGACCCTCAAGGTCAGGCTAACAAATGGATCAAGAACATGGAGAAAACCAATAGTCTTCAGCTTATTAAACTAAGTGACCCTGACTACGTGAGGACTCTGGAAAACTGTATCCAATTTGGAACTCCTG
Seq C2 exon
TGTTACTAGAAAATGTGGGAGAAGAACTGGACCCGATTCTAGAGCCTCTTCTGTTGAAGCAGACCTTCAAACAGGGTGGGAGCACATGTATCCGGCTTGGAGACTCCACTATTGAATATGCTCCTGACTTCCGCTTCTACATCACAACCAAGCTGAGAAACCCACACTATCTCCCAGAGACGTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'49-51,'49-50,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(2.0=12.7),PF127812=AAA_9=PU(12.6=52.7)
A:
PF127812=AAA_9=FE(22.5=100)
C2:
PF127812=AAA_9=FE(27.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGACGATTCGAGCTTG
R:
GTGTGGGTTTCTCAGCTTGGT
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]