GgaEX6041829 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10693213-10697834:-
Coord C1 exon
chr7:10697671-10697834
Coord A exon
chr7:10694993-10695147
Coord C2 exon
chr7:10693213-10693403
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTTGTATTTTTTCCTTCAGTAA
3' ss Score
8.26
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGCAAACTAAAGAGTGGACATTACTATGCAAAGCAAAAAACATTCCTTGTTCTGATGATTTTTCCTTAACAACTACCTTGGGAGAGCCAGTGGAAATCAGAGCTTGGAATATTGCTGGGTTACCCTCTGACATGTTTTCTGTTGATAATGGCATCATTATCTC
Seq A exon
TAATGCAAGAAGATGGCCTCTTATGATAGATCCTCAGGGTCAAGCAAATAAATGGATAAAGAATATGGAAAAAGTCAATAACCTGCATGTAATCAAGCTCAGCGACCCTCAGTTTGTTACGACACTGGAAAATTGCATTCAGTTTGGCAGTCCTG
Seq C2 exon
TGCTTCTTGAGAATATTGGAGAAGAACTGGATCCTATTCTAGAGCCACTCTTGCTCAAACAGACATTTAAGCAGTCAGGAAGTATATGCATTTGCCTCGGCGACTCCACTATTGAGTATGCTCCCGAATTCCGCTTTTATATCACTACTAAGCTGAGAAATCCACATTATCTTCCTGAAATATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.6=52.7)
A:
PF127812=AAA_9=FE(22.5=100)
C2:
PF127812=AAA_9=FE(27.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGACATTACTATGCAAAGCA
R:
TCGCCGAGGCAAATGCATATA
Band lengths:
256-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]