GgaEX6010300 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8653164-8655572:-
Coord C1 exon
chr12:8655427-8655572
Coord A exon
chr12:8653912-8654126
Coord C2 exon
chr12:8653164-8653356
Length
215 bp
Sequences
Splice sites
3' ss Seq
AACTGTCTTGTATGTTTTAGGCC
3' ss Score
10.27
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAGAAAAATATCCCTTGTTCTGAGAATTTCTCTTTGAGTAATACTCTGGGTGACCCAATAAAAATAAGATCCTGGAATATTGCTGGTTTACCAACTGATGTATTTTCTGTAGACAATGGGGTCATTGTTGAGAACTCAAGACGTTG
Seq A exon
GCCATTAATGATTGATCCTCAAGGTCAAGCAAATAAATGGATCAAGAATTTTGAGAAAGAAAACCACCTGAATGTTATCAAGATCAGTGACACAGATTATATGAGAACCCTGGAGAACTGCATTCAGTTTGGAAATCCCCTTCTGCTGGAAAATGTTGGAGAAGAACTAGACCCATCACTTGAACCTCTTCTGCTTAAGCAGACTTTTAAACAAG
Seq C2 exon
GAGGCATGGATTGTATCAGGCTTGGTGAGGCGGTTATTGAGTATTCCAGTGATTTCAAGTTTTTTATTACCACAAAACTGAGAAATCCACATTATATGCCTGAACTCGCTACAAAAGTTTCTTTACTCAATTTTATGATAACACCAGAGGGACTTGAAGACCAATTGCTAGGTATTGTTGTAGCAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'64-69,'64-68,65-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(14.7=69.4)
A:
PF127812=AAA_9=FE(31.2=100)
C2:
PF127812=AAA_9=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTGTTCTGAGAATTTCTCT
R:
TGGTCTTCAAGTCCCTCTGGT
Band lengths:
299-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]